[Comp-neuro] Open Source Brain workshop 2019: Call for presentations/demos of open datasets and tools
p.gleeson at ucl.ac.uk
Wed Aug 7 17:27:01 CEST 2019
[Apologies if you receive multiple copies of this due to cross-posting]
The 2019 Open Source Brain workshop will be held in Alghero, Sardinia on 9-11th September 2019.
There are a number of presentation slots still available for attendees to present open experimental data sets/databases/tools/simulators/libraries relevant to the goals of the meeting.
Full details: http://www.opensourcebrain.org/docs/Help/Meetings#OSB_2019
Open Source Brain (http://www.opensourcebrain.org) is a platform for sharing and collaboratively developing models in computational neuroscience. Models of cells and circuits in standardised formats can be visualised, analysed and simulated through a standard web browser. A key driver for the development of this technology is to improve accessibility, scientific scrutiny, reproducibility and reuse of models of brain function. The platform is described in a recent paper in Neuron: https://www.cell.com/neuron/fulltext/S0896-6273(19)30444-1
The 2019 OSB Workshop will highlight the latest features of OSB and engage current and future users of the platform through invited talks, posters, hands on demonstrations, and user presentations. Since we are substantially expanding the functionality of Open Source Brain to enable sharing of standardized experimental data used to build and test the models of neurons and circuits, this year’s meeting will have two key themes:
1) Accessible sharing of cellular neuroscience data
Through support for the Neurodata Without Borders (NWB) format, OSB will facilitate sharing of multiple types of experimental data used to constrain computational models, including electrophysiological recordings, Ca2+ fluorescence imaging, 2D, 3D and 4D imaging and behavioural data. Challenges, requirements and solutions to data standardization will be discussed.
2) Modelling cortical structures across scales
Cortical networks are modelled at many scales from abstract representations of interacting populations (neural masses) to networks of biophysically and morphologically detailed cell models. NeuroML is being expanded to cover a greater range of these models, which will allow them to be shared and simulated on OSB, facilitating comparison of models and ideas between researchers. This ongoing work is taking place as part of the SIG on Standardised Representations of Network Structures<https://www.incf.org/activities/standards-and-best-practices/incf-special-interest-groups/incf-sig-on-standardised>.
The registration fee for the meeting for 3 days will be £130. This will help cover organisation and speaker costs, meeting room hire, lunch, tea and coffee for 3 days and one workshop dinner.
Please register here<https://onlinestore.ucl.ac.uk/conferences-and-events/faculty-of-life-sciences-c08/neuroscience-physiology-pharmacology-g02/g02-open-source-brain-workshop-2019>. Registration closes on 1st September 2019.
Yazan Billeh (Allen Institute, USA)
Matteo Cantarelli (MetaCell Ltd)
Alex Cayco Gajic (UCL, UK & École Normale Supérieure, France)
Sharon Crook (Arizona State University, USA)
Jeffrey S. Diamond (NINDS, USA)
Ian Duguid (University of Edinburgh, UK)
Matt Earnshaw (University College London, UK)
Jan Fousek (Aix Marseille Université, France)
Padraig Gleeson (University College London, UK)
Boris Marin (Universidade Federal do ABC, Brazil)
Diego Restrepo (University of Colorado, USA)
Oliver Reubel (Lawrence Berkeley National Lab, USA)
Simon Schultz (Imperial College, UK)
Angus Silver (University College London, UK)
Sacha van Albada (Jülich Research Centre, Germany)
For more details please see: http://www.opensourcebrain.org/docs/Help/Meetings#OSB_2019
The OSB 2019 organising committee
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